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  <section id="repository-functions">
<h1>Repository functions<a class="headerlink" href="#repository-functions" title="Permalink to this heading"></a></h1>
<p>The <code class="xref py py-mod docutils literal notranslate"><span class="pre">gslab_make</span></code> library provides functions to check file sizes in a repository and modification status of files tracked by git. The checks are intended to facilitate proper committing activity.</p>
<dl class="py function">
<dt class="sig sig-object py">
<span class="sig-name descname"><span class="pre">check_module_size</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">paths</span></span></em><span class="sig-paren">)</span></dt>
<dd><p>Checks file sizes for files to be committed in the current working directory.
Compares file sizes to size limits in file <code class="docutils literal notranslate"><span class="pre">config</span></code> and
produces warnings if any of the following limits are exceeded.</p>
<ul class="simple">
<li><p>Individual size of a file tracked by git lfs (<code class="docutils literal notranslate"><span class="pre">file_MB_limit_lfs</span></code>)</p></li>
<li><p>Total size of all files tracked by git lfs (<code class="docutils literal notranslate"><span class="pre">total_MB_limit_lfs</span></code>)</p></li>
<li><p>Individual size of a file tracked by git (<code class="docutils literal notranslate"><span class="pre">file_MB_limit</span></code>)</p></li>
<li><p>Total size of all files tracked by git (<code class="docutils literal notranslate"><span class="pre">total_MB_limit</span></code>)</p></li>
</ul>
<p>Warning messages are appended to file <code class="docutils literal notranslate"><span class="pre">makelog</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>paths</strong> (<em>dict</em>) – Dictionary of paths. Dictionary should contain values for all keys listed below.</p>
</dd>
<dt class="field-even">Path Keys<span class="colon">:</span></dt>
<dd class="field-even"><ul class="simple">
<li><p><strong>config</strong> (<em>str</em>) – Path of project configuration file.</p></li>
<li><p><strong>makelog</strong> (<em>str</em>) – Path of makelog.</p></li>
</ul>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>None</p>
</dd>
</dl>
</dd></dl>

<dl class="py function">
<dt class="sig sig-object py">
<span class="sig-name descname"><span class="pre">get_modified_sources</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">paths</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">source_map</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">depth</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">inf</span></span></em><span class="sig-paren">)</span></dt>
<dd><p>Checks the modification status for all sources contained in list
<code class="docutils literal notranslate"><span class="pre">source_map</span></code> (returned by <a class="reference internal" href="sourcing.html#sourcing-functions"><span class="std std-ref">sourcing functions</span></a>).
Produces warning if sources have been modified according to git.
When walking through sources, float <code class="docutils literal notranslate"><span class="pre">depth</span></code> determines level of depth to walk.
Warning messages are appended to file <code class="docutils literal notranslate"><span class="pre">makelog</span></code>.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>paths</strong> (<em>dict</em>) – Dictionary of paths. Dictionary should contain values for all keys listed below.</p></li>
<li><p><strong>source_map</strong> (<em>list</em>) – Mapping of sources (returned from <a class="reference internal" href="sourcing.html#sourcing-functions"><span class="std std-ref">sourcing functions</span></a>).</p></li>
<li><p><strong>depth</strong> (<em>float</em><em>, </em><em>optional</em>) – Level of depth when walking through source directories. Defaults to infinite.</p></li>
</ul>
</dd>
<dt class="field-even">Path Keys<span class="colon">:</span></dt>
<dd class="field-even"><p><strong>makelog</strong> (<em>str</em>) – Path of makelog.</p>
</dd>
<dt class="field-odd">Returns<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>overlap</strong> – List of source files considered changed by git.</p>
</dd>
<dt class="field-even">Return type<span class="colon">:</span></dt>
<dd class="field-even"><p>list</p>
</dd>
</dl>
<p class="rubric">Notes</p>
</dd></dl>

<dl class="py function">
<dt class="sig sig-object py">
<span class="sig-name descname"><span class="pre">check_conda_status</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">root</span></span></em><span class="sig-paren">)</span></dt>
<dd><p>Checks that conda is activated.
Produces warning if it is not.
Produces warning if setup/conda_env.yaml has been altered more recently than the .</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>root</strong> (<em>str</em>) – Directory of root.</p>
</dd>
<dt class="field-even">Return type<span class="colon">:</span></dt>
<dd class="field-even"><p>None</p>
</dd>
</dl>
<p class="rubric">Notes</p>
</dd></dl>

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